The following are problems faced during the construction of the Uganda railway
- Physical obstacles like coasts, riverbeds, and steep escapements of the rift valley caused engineering problems especially in Kenya.
- Wild animals like the loins in the Tsavo region of Kenya stalled the project as people failed to work there until they were shot down by Colonel Peterson.
- Hostile African tribes also made the construction work difficult. For example, the Nandi Stole construction materials and destroyed telegraphic wires and rails before disappearing into the hills.
- The harsh climate like the heavy rains that washed away marked lines and made some places waterlogged made construction work difficult.
- There was also the lack of water especially around the Teru desert, which delayed construction work for some time.
- Labor shortage. Most Africans were uninterested and unwilling to work. They spent long hours at home and when they came for work many would disappear before the day closed.
- Tropical diseases like malaria, jiggers, and smallpox also proved a problem. They claimed the lives of many Indian constructors. Jiggers alone nearly finished the Indian coolies.
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